3D+Time Datasets

GFP-actin-stained A549 Lung Cancer cells embedded in a Matrigel matrix

Dr. A. Rouzaut. Cell Adhesion and Metastasis Laboratory, Center for Applied Medical Research (CIMA), Pamplona, Spain

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-C3DH-A549.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-C3DH-A549.zip


GFP-transfected H157 Lung Cancer cells embedded in a matrigel matrix

Dr. A. Rouzaut. Cell Adhesion and Metastasis Laboratory, Center for Applied Medical Research (CIMA), Pamplona, Spain

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-C3DH-H157.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-C3DH-H157.zip


MDA231 human breast carcinoma cells infected with a pMSCV vector including the GFP sequence, embedded in a collagen matrix

Dr. R. Kamm. Dept. of Biological Engineering, Massachusetts Institute of Technology, Cambridge MA (USA)

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-C3DL-MDA231.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-C3DL-MDA231.zip


C.elegans developing embryo

Waterston Lab, University of Washington, Seattle, WA, USA

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-N3DH-CE.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-N3DH-CE.zip


Chinese Hamster Ovarian (CHO) nuclei overexpressing GFP-PCNA

Dr. J. Essers. Dept. of Cell Biology, Erasmus Medical Center, Rotterdam, The Netherlands

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-N3DH-CHO.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-N3DH-CHO.zip


Developing Drosophila Melanogaster embryo

Dr. P. Keller. Howard Hughes Medical Institute, Janelia Farms Research Campus, Ashburn VA, USA

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-N3DL-DRO.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-N3DL-DRO.zip


Developing Tribolium Castaneum embryo (3D cartographic projection)

Dr. A. Jain. Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-N3DL-TRIC.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-N3DL-TRIC.zip


Simulated GFP-actin-stained A549 Lung Cancer cells embedded in a Matrigel matrix

Dr. M. Maška and Dr. D. V. Sorokin. Centre for Biomedical Image Analysis (CBIA),

Masaryk University, Brno, Czech Republic (Created using FiloGen, part of Cytopacq)

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-C3DH-A549-SIM.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-C3DH-A549-SIM.zip


Simulated nuclei of HL60 cells stained with Hoescht

Dr. V. Ulman and Dr. D. Svoboda. Centre for Biomedical Image Analysis (CBIA),

Masaryk University, Brno, Czech Republic (Created using MitoGen, part of Cytopacq)

Training dataset: http://data.celltrackingchallenge.net/training-datasets/Fluo-N3DH-SIM+.zip

Challenge dataset: http://data.celltrackingchallenge.net/challenge-datasets/Fluo-N3DH-SIM+.zip