Algorithms
KTH-SE (1), segmentation & tracking, 03/2021 (regular submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (1*), segmentation & tracking, 06/2021 (generalizable submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: None
Software download: Available
Reusable source code: https://github.com/klasma/BaxterAlgorithms/tree/ctc2021
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: None
Software download: Available
Reusable source code: https://github.com/klasma/BaxterAlgorithms/tree/ctc2021
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (2), segmentation & tracking, 03/2021 (regular submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (3), segmentation & tracking, 03/2020 (regular submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (4), segmentation & tracking, 03/2020 (regular submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (5), segmentation & tracking, 03/2020 (regular submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Joakim Jaldén – KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Helen M. Blau – Baxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA, USA
Description: Available
Parameter configuration: Available
Software download: Available
Reusable source code: Not required at the time of submission
Evaluation results within the Cell Tracking Benchmark:

Evaluation results within the Cell Segmentation Benchmark:

KTH-SE (*), linking only, 04/2024 (generalizable submission)
Authors
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Description: Available
Parameter configuration: None
Pre-recorded talk: Available
Software download: Available
Reusable source code: https://github.com/klasma/BaxterAlgorithms/tree/ctc2024
Evaluation results within the Cell Linking Benchmark:
Klas E. G. Magnusson – since 2017: RaySearch Laboratories, Stockholm, Sweden
until 2016: KTH Royal Institute of Technology, ACCESS Linnaeus Center, Stockholm, Sweden
Description: Available
Parameter configuration: None
Pre-recorded talk: Available
Software download: Available
Reusable source code: https://github.com/klasma/BaxterAlgorithms/tree/ctc2024
Evaluation results within the Cell Linking Benchmark:
